Index

_

_add_istim() (pyfibers.IntraStim method) (pyfibers.stimulation.IntraStim method), [1] _create_sections() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1]

_make_passive() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1]

A

ABSOLUTE_DIFFERENCE (pyfibers.stimulation.TerminationMode attribute), [1] (pyfibers.TerminationMode attribute) ABSOLUTE_INCREMENT (pyfibers.BoundsSearchMode attribute) (pyfibers.stimulation.BoundsSearchMode attribute), [1] ACTIVATION (pyfibers.stimulation.ThresholdCondition attribute), [1] (pyfibers.ThresholdCondition attribute) add_intrinsic_activity() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] ap_checker() (pyfibers.Stimulation static method) (pyfibers.stimulation.Stimulation static method), [1] apc (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

apcounts() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] ARITHMETIC (pyfibers.BisectionMean attribute) (pyfibers.stimulation.BisectionMean attribute), [1] axon_diam (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute)

B

balance() (pyfibers.models.thio.ThioFiber method) (pyfibers.models.ThioFiber method) (pyfibers.models.tigerholm.TigerholmFiber method) (pyfibers.models.TigerholmFiber method) BLOCK (pyfibers.stimulation.ThresholdCondition attribute), [1] (pyfibers.ThresholdCondition attribute)

build_fiber() (in module pyfibers) (in module pyfibers.fiber), [1] build_fiber_3d() (in module pyfibers) (in module pyfibers.fiber), [1]

C

calculate_periaxonal_current() (pyfibers.Fiber static method) (pyfibers.fiber.Fiber static method), [1] coordinates (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) create_flut() (pyfibers.models.mrg.MRGFiber method) (pyfibers.models.MRGFiber method) create_myelin() (pyfibers.models.sweeney.SweeneyFiber method) (pyfibers.models.SweeneyFiber method) create_mysa() (pyfibers.models.mrg.MRGFiber method) (pyfibers.models.MRGFiber method)

create_node() (pyfibers.models.mrg.MRGFiber method) (pyfibers.models.MRGFiber method) (pyfibers.models.sweeney.SweeneyFiber method) (pyfibers.models.SweeneyFiber method) create_rattay() (pyfibers.models.rattay.RattayFiber method) (pyfibers.models.RattayFiber method) create_schild() (pyfibers.models.schild.SchildFiber method) (pyfibers.models.SchildFiber method) create_stin() (pyfibers.models.mrg.MRGFiber method) (pyfibers.models.MRGFiber method) create_sundt() (pyfibers.models.sundt.SundtFiber method) (pyfibers.models.SundtFiber method) create_thio() (pyfibers.models.thio.ThioFiber method) (pyfibers.models.ThioFiber method) create_tigerholm() (pyfibers.models.tigerholm.TigerholmFiber method) (pyfibers.models.TigerholmFiber method)

D

delta_z (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

diameters (pyfibers.models.mrg.MRGDiscreteParameters attribute)

E

end_excitation_checker() (pyfibers.Stimulation static method) (pyfibers.stimulation.Stimulation static method), [1]

F

Fiber (class in pyfibers) (class in pyfibers.fiber), [1]

FiberParameters (class in pyfibers.models.mrg) find_threshold() (pyfibers.Stimulation method) (pyfibers.stimulation.Stimulation method), [1]

G

gating (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) gating_variables (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) generate() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] (pyfibers.models.mrg.MRGFiber method) (pyfibers.models.MRGFiber method) (pyfibers.models.rattay.RattayFiber method) (pyfibers.models.RattayFiber method) (pyfibers.models.schild.SchildFiber method) (pyfibers.models.SchildFiber method) (pyfibers.models.sundt.SundtFiber method) (pyfibers.models.SundtFiber method) (pyfibers.models.sweeney.SweeneyFiber method) (pyfibers.models.SweeneyFiber method) (pyfibers.models.thio.ThioFiber method) (pyfibers.models.ThioFiber method) (pyfibers.models.tigerholm.TigerholmFiber method) (pyfibers.models.TigerholmFiber method)

GEOMETRIC (pyfibers.BisectionMean attribute) (pyfibers.stimulation.BisectionMean attribute), [1] get_mrg_params() (pyfibers.models.mrg.MRGFiber method) (pyfibers.models.MRGFiber method)

I

im (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

IntraStim (class in pyfibers) (class in pyfibers.stimulation), [1] is_3d() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1]

L

last_shift_amount (pyfibers.Fiber property) (pyfibers.fiber.Fiber property), [1] length (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) loc() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1]

loc_index() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] longitudinal_coordinates (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

M

main() (in module pyfibers.compile) measure_cv() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] membrane_currents() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] module pyfibers pyfibers.compile pyfibers.fiber, [1] pyfibers.model_enum, [1] pyfibers.models pyfibers.models.mrg pyfibers.models.rattay pyfibers.models.schild pyfibers.models.sundt pyfibers.models.sweeney pyfibers.models.thio pyfibers.models.tigerholm pyfibers.stimulation, [1]

MRG_DISCRETE (pyfibers.FiberModel attribute) (pyfibers.models.mrg.FiberParameters attribute) MRG_INTERPOLATION (pyfibers.FiberModel attribute) (pyfibers.models.mrg.FiberParameters attribute) mrg_params (pyfibers.models.mrg.MRGFiber attribute) MRGDiscreteParameters (class in pyfibers.models.mrg) MRGFiber (class in pyfibers.models) (class in pyfibers.models.mrg) MRGInterpolationParameters (class in pyfibers.models.mrg) mycm (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) myelinated (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) mygm (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute)

N

nc (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) nl (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) node_diam (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) node_length (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) nodebuilder() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1]

nodecount (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) nodes (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

P

paranodal_length_1 (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) paranodal_length_2 (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) passive_end_nodes (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) path (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) PENA (pyfibers.FiberModel attribute) (pyfibers.models.mrg.FiberParameters attribute) PERCENT_DIFFERENCE (pyfibers.stimulation.TerminationMode attribute), [1] (pyfibers.TerminationMode attribute) PERCENT_INCREMENT (pyfibers.BoundsSearchMode attribute) (pyfibers.stimulation.BoundsSearchMode attribute), [1] point_source_potentials() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] potentials (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

pre_run_setup() (pyfibers.Stimulation method) (pyfibers.stimulation.Stimulation method), [1] pyfibers module pyfibers.compile module pyfibers.fiber module, [1] pyfibers.model_enum module, [1] pyfibers.models module pyfibers.models.mrg module pyfibers.models.rattay module pyfibers.models.schild module pyfibers.models.sundt module pyfibers.models.sweeney module pyfibers.models.thio module pyfibers.models.tigerholm module pyfibers.stimulation module, [1]

R

RATTAY (pyfibers.FiberModel attribute) RattayFiber (class in pyfibers.models) (class in pyfibers.models.rattay) record_gating() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] record_im() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] record_sfap() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] record_values() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] record_vext() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] record_vm() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1]

register_custom_fiber() (in module pyfibers) (in module pyfibers.model_enum), [1] resample_potentials() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] resample_potentials_3d() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] rhoa (pyfibers.models.mrg.MRGDiscreteParameters attribute) (pyfibers.models.mrg.MRGInterpolationParameters attribute) run_sim() (pyfibers.IntraStim method) (pyfibers.ScaledStim method) (pyfibers.Stimulation method) (pyfibers.stimulation.IntraStim method), [1] (pyfibers.stimulation.ScaledStim method), [1] (pyfibers.stimulation.Stimulation method), [1]

S

ScaledStim (class in pyfibers) (class in pyfibers.stimulation), [1] SCHILD94 (pyfibers.FiberModel attribute) SCHILD97 (pyfibers.FiberModel attribute) SchildFiber (class in pyfibers.models) (class in pyfibers.models.schild) sections (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) set_save_gating() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] set_save_im() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] set_save_vext() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] set_save_vm() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] set_xyz() (pyfibers.Fiber method) (pyfibers.fiber.Fiber method), [1] sfap() (pyfibers.Fiber static method) (pyfibers.fiber.Fiber static method), [1] shifted_coordinates (pyfibers.Fiber property) (pyfibers.fiber.Fiber property), [1] SMALL_MRG_INTERPOLATION (pyfibers.FiberModel attribute) stim (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

Stimulation (class in pyfibers) (class in pyfibers.stimulation), [1] submodels (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute) (pyfibers.models.TigerholmFiber attribute) SUNDT (pyfibers.FiberModel attribute) SundtFiber (class in pyfibers.models) (class in pyfibers.models.sundt) supra_exit() (pyfibers.Stimulation method) (pyfibers.stimulation.Stimulation method), [1] SWEENEY (pyfibers.FiberModel attribute) SweeneyFiber (class in pyfibers.models) (class in pyfibers.models.sweeney) syn (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

T

THIO_AUTONOMIC (pyfibers.FiberModel attribute) THIO_CUTANEOUS (pyfibers.FiberModel attribute) thio_params (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.ThioFiber attribute) ThioFiber (class in pyfibers.models) (class in pyfibers.models.thio) threshold_checker() (pyfibers.Stimulation static method) (pyfibers.stimulation.Stimulation static method), [1] threshsim() (pyfibers.Stimulation method) (pyfibers.stimulation.Stimulation method), [1]

TIGERHOLM (pyfibers.FiberModel attribute) TigerholmFiber (class in pyfibers.models) (class in pyfibers.models.tigerholm) time (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

V

vext (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)

vm (pyfibers.models.mrg.MRGFiber attribute) (pyfibers.models.rattay.RattayFiber attribute) (pyfibers.models.schild.SchildFiber attribute) (pyfibers.models.sundt.SundtFiber attribute) (pyfibers.models.sweeney.SweeneyFiber attribute) (pyfibers.models.thio.ThioFiber attribute) (pyfibers.models.tigerholm.TigerholmFiber attribute)